Dr. Öğr. Üyesi SİNEM KOÇER

Yayın Ağı

Makaleler 18

1. Nanotechnology-driven enhancement and modulation of immune responses in monkeypox and respiratory syncytial virus nanovaccine research

Niculescu A., Dumitrascu A., Koçer A. T., PELİT ARAYICI P., Yuka S. A., KOÇER S., et al.

Colloids and Surfaces B: Biointerfaces , cilt.254, 2025 (SCI-Expanded, Scopus)

2. Straightforward fabrication of bioactive polymeric surfaces for bacterial immobilization

Deveci G., KOÇER S., BALIK D., Kahveci M. Ü.

Journal of Macromolecular Science, Part A: Pure and Applied Chemistry , 2025 (SCI-Expanded, Scopus)

3. Expression, Purification and Biochemical Characterisation of Babesia bigemina Lactate Dehydrogenase

Bostancioglu S. M., Danis O., Kocer S., Mutlu O.

Molecular Biotechnology , 2025 (SCI-Expanded, Scopus)

4. Public health challenges after the February 6 earthquakes: A comprehensive review of immediate and long-term impacts in Türkiye

Koçer A. T., Akpek A., Vural A., Aslan A., Erkoç A., Özen A. M., et al.

International Journal of Disaster Risk Reduction , cilt.114, 2024 (SCI-Expanded, Scopus)

5. Identification of novel compounds against Acinetobacter baumannii 3-oxoacyl-[acyl-carrier-protein] synthase I (FabB) via comprehensive structure-based computational approaches

Albayrak E., KOÇER S., MUTLU Ö.

Journal of Molecular Graphics and Modelling , cilt.124, 2023 (SCI-Expanded, Scopus)

6. Heterologous expression, purification, and partial characterisation of the apicoplast protein 3-oxoacyl-[acyl-carrier-protein] reductase from Toxoplasma gondii

Aygün C., KOÇER S., DANIŞ Ö., ÇUBUK S., MUTLU Ö.

Protein Expression and Purification , cilt.202, 2023 (SCI-Expanded, Scopus)

7. Heterologous expression, biochemical characterisation and computational analysis of Bacteroides fragilis enolase

Ugurel E., KOÇER S., Sariyer E., MUTLU Ö., Inci T. G., Ugurel O. M., et al.

Computational Biology and Chemistry , cilt.98, 2022 (SCI-Expanded, Scopus)

8. Targeting SARS-CoV-2 Nsp12/Nsp8 interaction interface with approved and investigational drugs: an in silico structure-based approach

MUTLU Ö., Ugurel O. M., Sariyer E., Ata O., Inci T. G., Ugurel E., et al.

Journal of Biomolecular Structure and Dynamics , cilt.40, sa.2, ss.918-930, 2022 (SCI-Expanded, Scopus)

9. Identification of potential inhibitors of Trichomonas vaginalis iron-containing superoxide dismutase by computer-aided drug design approach

KOÇER S., MUTLU Ö.

Structural Chemistry , cilt.32, sa.5, ss.1873-1882, 2021 (SCI-Expanded, Scopus)

10. In vitro inhibition studies of coumarin derivatives on Bos taurus enolase and elucidating their interaction by molecular docking, molecular dynamics simulations and MMGB(PB)SA binding energy calculation

Sariyer E., KOÇER S., DANIŞ Ö., Turgut-Balik D.

Bioorganic Chemistry , cilt.110, 2021 (SCI-Expanded, Scopus)

11. Hit identification against peptidyl-prolyl isomerase of Theileria annulata by combined virtual high-throughput screening and molecular dynamics simulation approach

Spahi S., MUTLU Ö., Sariyer E., KOÇER S., Ugurel E., Turgut-Balik D.

Computational Biology and Chemistry , cilt.89, 2020 (SCI-Expanded, Scopus)

12. Evaluation of the potency of FDA-approved drugs on wild type and mutant SARS-CoV-2 helicase (Nsp13)

Ugurel O. M., MUTLU Ö., Sariyer E., KOÇER S., Ugurel E., Inci T. G., et al.

International Journal of Biological Macromolecules , cilt.163, ss.1687-1696, 2020 (SCI-Expanded, Scopus)

13. Discovery and evaluation of inhibitory activity and mechanism of arylcoumarin derivatives on Theileria annulata enolase by in vitro and molecular docking studies

Yakarsonmez S., DANIŞ Ö., MUTLU Ö., TOPUZOĞULLARI M., Sariyer E., Yuce-Dursun B., et al.

Molecular Diversity , cilt.24, sa.4, ss.1149-1164, 2020 (SCI-Expanded, Scopus)

14. Functional analyses of dipeptide and pentapeptide insertions on Theileria annulata enolase by site-directed mutagenesis and in silico approaches

Yakarsonmez S., Cengiz E. C., MUTLU Ö., Turgut-Balik D.

Biochimica et Biophysica Acta - Proteins and Proteomics , cilt.1867, sa.7-8, ss.732-739, 2019 (SCI-Expanded, Scopus)

15. A study of Bos taurus muscle specific enolase; biochemical characterization, homology modelling and investigation of molecular interaction using molecular docking and dynamics simulations

Sariyer E., KOÇER S., DANIŞ Ö., Turgut-Balik D.

International Journal of Biological Macromolecules , cilt.120, ss.2346-2353, 2018 (SCI-Expanded, Scopus)

16. Comprehensive structural analysis of the open and closed conformations of Theileria annulata enolase by molecular modelling and docking

MUTLU Ö., KOÇER S., Sariyer E., DANIŞ Ö., Yuce-Dursun B., TOPUZOĞULLARI M., et al.

Computational Biology and Chemistry , cilt.64, ss.134-144, 2016 (SCI-Expanded, Scopus)

17. Biochemical and in silico Characterization of Recombinant L-Lactate Dehydrogenase of Theileria annulata

NURAL YAMAN B., ERDEMİR A., MUTLU Ö., KOÇER S., DANIŞ Ö., TOPUZOĞULLARI M., et al.

Molecular Biotechnology , cilt.58, sa.4, ss.256-267, 2016 (SCI-Expanded, Scopus)

18. Cloning, expression and characterization of the gene encoding the enolase from Fusobacterium nucleatum

KOÇER S., Cayir E., MUTLU Ö., NURAL YAMAN B., Sariyer E., TOPUZOĞULLARI M., et al.

Applied Biochemistry and Microbiology , cilt.52, sa.1, ss.23-30, 2016 (SCI-Expanded, Scopus)

Hakemli Bilimsel Toplantılarda Yayımlanmış Bildiriler 29

1. Elektrosprey ve 3B Biyoyazıcı Yöntemleri ile Cinchona Ekstresi ve Arap Zamkı İçeren Fonksiyonel Yara Örtülerinin Geliştirilmesi

Büyüktaş C., KOÇER S., ERARSLAN A., KOÇER A. T.

6th International Eurasian Conference on Science, Engineering and Technology (EurasianSciEnTech 2025), Türkiye, 25 - 27 Haziran 2025, (Özet Bildiri)

2. Aspergillus fumigatus ERG6 Protein Modelinin Antifungal Ajanlarla Moleküler Etkileşim Analizi

KOÇER S.

6th International Eurasian Conference on Science, Engineering and Technology (EurasianSciEnTech 2025), Türkiye, 25 - 27 Haziran 2025, (Özet Bildiri)

3. Salmonella enteritidis UDP-N-asetilglukozamin 1-karboksiviniltransferaz (MurA)’ının farklı homoloji modellerinin karşılaştırılması

Koçer S., Koçer A. T.

7th International Eurasian Conference on Biological and Chemical Sciences (EurasianBioChem 2024), Ankara, Türkiye, 02 Ekim 2024, (Özet Bildiri)

4. Hit identification against Acinetobacter baumannii FabB via virtual screening, molecular dynamics simulation, and free energy calculations

ALBAYRAK E., KOÇER S., MUTLU Ö.

Royal Society of Chemistry, Chemical Biology Symposium 2022, Londrina, Brezilya, 09 Mayıs 2022, cilt.207890, ss.1-77, (Özet Bildiri)

5. Drug repositioning to identify SARS-CoV-2 Nsp12/Nsp8 interaction interface inhibitors.

MUTLU Ö., UĞUREL O. M., SARIYER E., ATA O., İnci T. G., Uğurel E., et al.

FEMS 2020 ONLINE CONFERENCE, Sırbistan, 28 - 31 Ekim 2020, (Özet Bildiri)

6. Identification of Fusobacterium nucleatum 1-deoxy-D-xylulose 5-phosphate Reductoisomerase Inhibitor Candidates by Molecular Docking Analyses

KOÇER S., BALIK D.

Bio-Türkiye-International Biotechnology Congress, 5 - 07 Mart 2020, (Özet Bildiri)

7. Evaluation of Plasmodium vivax and Theileria annulata LDH in Diagnosis

İnci T. G., UĞUREL O. M., YAKARSÖNMEZ S., BALIK D.

Eurasian Congress of Molecular Biotechnology (ECOMB 2019), Trabzon, Türkiye, 19 - 21 Eylül 2019, (Özet Bildiri)

8. Investigation of Bacteroides fragilis Enolase Inhibitors Using in silico Methods

Uğurel E., YAKARSÖNMEZ S., SARIYER E., MUTLU Ö., UĞUREL O. M., BALIK D.

Eurasian Congress of Molecular Biotechnology (ECOMB 2019), Trabzon, Türkiye, 19 - 21 Eylül 2019, (Özet Bildiri)

9. Bacteriodes Fragillis Enolaz Inhibitorü Belirlenmesine Yönelik Sanal Ligand Tarama Ve Moleküler Yanaştırma Çalışmaları

Uğurel E., YAKARSÖNMEZ S., SARIYER E., MUTLU Ö., UĞUREL O. M., BALIK D.

31. Ulusal Kimya Kongresi, İstanbul, Türkiye, 10 - 13 Eylül 2019, (Özet Bildiri)

10. Plasmodium vivax LDH’Inın Tanı Kiti Geliştirilmesi Amacıyla Saflaştırılması

İnci T. G., UĞUREL O. M., YAKARSÖNMEZ S., BALIK D.

31. Ulusal Kimya Kongresi, İstanbul, Türkiye, 10 - 13 Eylül 2019, (Özet Bildiri)

11. A Structure-Based Drug Design Study Interactions of Bos taurus Enolase and Coumarin Derivatives Through Molecular Docking and Molecular Dynamic Simulation

SARIYER E., YAKARSÖNMEZ S., DANIŞ Ö., BALIK D.

6th International BAU Drug Design Congress, Istanbul, Turkey, 13 - 15 Aralık 2018

12. Comparative Modelling and Molecular Dynamic Simulation of Bacteriodes fragillis Enolase

Uğurel E., YAKARSÖNMEZ S., SARIYER E., MUTLU Ö., UĞUREL O. M., BALIK D.

6th International BAU Drug Design Congress, Istanbul, Turkey, 13 - 15 Aralık 2018

13. Cloning, heterologous expression and purification of Toxoplasma gondii FabG (3-oxoacyl-[acyl-carrier-protein] reductase) enzyme

Aygün C., YAKARSÖNMEZ S., MUTLU Ö.

1.Euroasia Biochemical Approaches Technologies Congress (EBAT 2018), Antalya, Turkey, Türkiye, 27 - 30 Ekim 2018, (Özet Bildiri)

14. Structural Modelling and Molecular Docking Analysis of Trichomonas vaginalis Iron-Containing Superoxide Dismutase towards Computer-Aided Drug Design

KOÇER S., MUTLU Ö.

1st Eurasia Biochemical Approaches & Technologıes (1. EBAT), Türkiye, 27 - 30 Ekim 2018, (Özet Bildiri)

15. Biyo-Aktif Polimerler ile Biyolojik Moleküllere Dayalı Tanı ve Tedavi Yöntemlerinin Ultra-Hızlı Biyoortogonal Tepkimelerle Geliştirilmesi

ATEŞ M. Y., ÇETİNKAYA A., YAKARSÖNMEZ S., UĞUREL O. M., BALIK D., ERCAN Ç., et al.

6. Ulusal Biyomühendislik Öğrenci Kongresi,İstanbul, 5-6 Nisan 2018, Türkiye, 5 - 06 Nisan 2018, (Özet Bildiri)

16. Trichomonas vaginalis Tedavisinde in silico Analizlerle Yeni Aday İlaçların Belirlenmesi İçin 14-3-3 Proteininin Modellenmesi

YAKARSÖNMEZ S., MUTLU Ö., BALIK D.

19. UluslararasıKatılımlı Ulusal Biyoteknoloji Kongresi, Eskişehir, 1 -3 Aralık 2017., Türkiye, 1 - 03 Aralık 2017, (Özet Bildiri)

17. In silico Analyses of both Wild Type and Mutant TaPIN1 towards New Drug Discovery

Spahi S., SARIYER E., MUTLU Ö., YAKARSÖNMEZ S., BALIK D.

5th International BAU-Drug Design Congress, Istanbul, Turkey, 19 - 21 Ekim 2017

18. Preparation of Concanavalin a Decorated P(PEGMA-co-NMAS) Polymeric Surfaces and Utilization in Bacterial Cell Detection

DEVECİ G., YAKARSÖNMEZ S., BALIK D., KAHVECİ M. Ü.

APME 17 Advanced Polymers via Macromolecular Engineering, Ghent, Belgium, 21 - 25 Mayıs 2017

Metrikler

Yayın

Yayın (WoS)

Yayın (Scopus)

Atıf (WoS)

H-İndeks (WoS)

Atıf (Scopus)

H-İndeks (Scopus)

Atıf (Scholar)

107

Yayınlar & Eserler

Yayın

Yayın (WoS)

Yayın (Scopus)

Atıf (WoS)

H-İndeks (WoS)

Atıf (Scopus)

H-İndeks (Scopus)

Atıf (Scholar)

H-İndeks (Scholar)

Proje

Açık Erişim